A CF hood will look out of place on a car with flip paint. And if you paint the CF hood, it won't look good without A LOT of work to it, because the CF hood's surfaces are not even. You can't really tell, when they're not painted, but as soon as they are painted, you see the wavey surface.
Stone chips are no problem, when we painted my car we put on new clearcoat to my CF bonnet. If you got scratches, you can sand the clearcoat down and put new one on.
If you don't use hoodpins, the bonnet will lift and move while driving fast. Looks really scary.
TBH don't do flip paint!!! If you want a bodykit, do it, but go with a nice one tone color. If you want CF parts you can get them and they will look good with any one tone color.