Chris
Funny you should mention speedo conversions in connection with this. If I recall correctly some 4 years ago when I got my Supra, the conversion had been done so that the divided signal was being fed to everything , speedo, odo, cruise, ECU, P Steering , Air con etc and I occasionally had this problem, but ignored it.
I changed this 2 years ago so that the divided signal only feeds the speedo and cruise (ODO reads miles fine from the undivided signal if modified to show miles or UK ODO used) with everything else receiving the undivided signal so that it responds as it was designed to do and I've had no recurrence.
Maybe just coincidence, but would feeding a divided signal to the ECU cause this problem i.e cause the ECU occasional confusion?
Mark Brown